Entering edit mode
6.1 years ago
prabin.dm
▴
260
Hi
I am using 'rtracklayer' package in R to import a ".wig" file. Its a Chip-Seq data.
After importing I get the SimpleRleList which I don't know how to use in "ChIPseekr". I am hoping converting to GRanges might help. Any help how to do it will be great.
here are my codes
temp <- import("GSM1382416_H2AX_MCF7_wz_E2_treat_afterfiting_all.wig.gz", trackline =FALSE)> newpeak = coverage(temp)
class(newpeaks)
[1] "SimpleRleList" attr(,"package")
[1] "IRanges"
There was a simple solution. I got it. Thanks
post the solution if you have found it.