SimpleRleList to GRanges
0
0
Entering edit mode
6.1 years ago
prabin.dm ▴ 260

Hi

I am using 'rtracklayer' package in R to import a ".wig" file. Its a Chip-Seq data.

After importing I get the SimpleRleList which I don't know how to use in "ChIPseekr". I am hoping converting to GRanges might help. Any help how to do it will be great.

here are my codes

temp <- import("GSM1382416_H2AX_MCF7_wz_E2_treat_afterfiting_all.wig.gz", trackline =FALSE)> newpeak = coverage(temp)

class(newpeaks) 
[1] "SimpleRleList" attr(,"package") 
[1] "IRanges"
ChIP-Seq rtracklayer • 1.4k views
ADD COMMENT
0
Entering edit mode

There was a simple solution. I got it. Thanks

ADD REPLY
0
Entering edit mode

post the solution if you have found it.

ADD REPLY

Login before adding your answer.

Traffic: 1743 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6