RNAseqGene in getFirehoseData (RTCGAToolbox)
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6.1 years ago
Roxana • 0

I try to use getDiffExpressedGenes for DEG analysis over LUSC. but when I try to get data using getFirehoseData I got error of no RNA_Seq and when I browse firebrowse, I found that there is no RNASeqGene in firehose. would you please help me how can I conver GDCQuery data to firehose data to run getDiffExpressedGenes or is there any similar workflow to find DEGs?
rna-seq firehose RNA-Seq • 1.2k views
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TCGAbiolinks? that works with GUI have you tried it?

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Yes it is not included there as well

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