Busco lineage database for Staphylococcus pasteuri assembly

Question

[jeetsahu]

I am doing assessment of assembly of Staphylococcus pasteuri genome for the orthologue presence absence using blastn with BUSCO. Which lineage database to use for the same?

[WouterDeCoster]

This is a question, not a forum post. Please use a more informative title, for example in this case mentioning BUSCO. In addition, please use sensible tags. As such experts can easily find your question. I have changed this for you now, but keep this in mind for further questions.

[jeetsahu]

Thanks! will keep this mind.

Answer 1

[GenoMax]

Bacillales would be relevant (download link from Busco site).

[jeetsahu]

What should be the "model" organism to use in augustus for gene prediction?

[GenoMax]

Why do you want to use Augustus for a bacterial genome. AUGUSTUS is a program that predicts genes in **eukaryotic** genomic sequences.

You may want to use prokka instead (https://github.com/tseemann/prokka ).

[jeetsahu]

Thanks for correction. Does prokka also use some model organism for gene prediction ?