Question

NCI-60 RNA-seq data

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7.3 years ago

nvucic ▴ 70

Hello,

Can someone tell me is it possible and if it is, how to obtain raw RNA-seq data for NCI-60 cell lines from this project: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA282446?

Thank you

RNA-seq next-gen • 3.2k views

ADD COMMENT • link updated 16 months ago by Ram 44k • written 7.3 years ago by nvucic ▴ 70

score 1 · Answer 1 · 2017-08-11

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7.3 years ago

colindaven 7.0k

Looks like it is controlled access. I checked on the EBI ENA too, which make FASTQ files available, but no options there either. Contact the project manager or check the publication for details ?

ADD COMMENT • link 7.3 years ago by colindaven 7.0k

score 1 · Answer 2 · 2018-11-01

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6.1 years ago

Praneet Chaturvedi ▴ 120

You will need dbGAP access to retrieve data from SRA of this kind. This data I think was not submitted using normal SRA portal and was submitted through dbGAP portal : https://www.ncbi.nlm.nih.gov/sra/docs/submitdbgap/

Cheers !!

ADD COMMENT • link 6.1 years ago by Praneet Chaturvedi ▴ 120

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this comment was deleted. there was a mix up in the cell line panel of interest.

ADD REPLY • link 6.1 years ago by elmbeech ▴ 70

score 0 · Answer 3 · 2018-11-01

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6.1 years ago

elmbeech ▴ 70

this answer was deleted. there was a mix up in the cell line panel of interest.

ADD COMMENT • link 6.1 years ago by elmbeech ▴ 70