Pairwise2 Biopython Module Get The Score In Variable

Question

[Maria]

I'm using pairwise2 module from biopython, Is it possible to get the score in a variable and how ? I tried the following and it didn't work :

from Bio import pairwise2
from Bio.pairwise2 import format_alignment

for a in pairwise2.align.localms("ACCGT", "ACGC",1,-1,-2,-2):
    score= a.score

[fareehakanwal90]

is it possible to give the sequence files as input to pairwise2??

[tslakshmipriya90]

same question . anyone knows how to get the score in a variable???

[Joe]

Please don't dredge up old posts with new questions.

What about the answer below isn't satisfactory? If you believe you have a new question that the existing answers don't address, please ask a new question, ideally showing why the existing answers fail for your data.

Answer 1

[Maria]

Yes it is possible,

for a in pairwise2.align.localms("ACCGT", "ACGC",1,-1,-2,-2):
      al1,al2, score, begin, end = a