Scaling Data error on Seurat

Question

[Bios]

Here's my code below. I don't know why scaling the data gives me an error. Any help will be appreciated. Thank you

ctrl.data <- Read10X(data.dir = "/Users/kech/Desktop/stim")

stim.data <- Read10X(data.dir = "/Users/kech/Desktop/stim")

ctrl.data <- Read10X(data.dir = "/Users/kech/Desktop/ctrl")

stim.data <- Read10X(data.dir = "/Users/kech/Desktop/stim")

ctrl <- CreateSeuratObject(raw.data = ctrl.data, project = "ASTHMA_CTRL", min.cells = 5)

[e-mail]$stim <- "CTRL"

ctrl <- FilterCells(ctrl, subset.names = "nGene", low.thresholds = 500, high.thresholds = Inf)

ctrl <- NormalizeData(ctrl)

ctrl <- ScaleData(ctrl, display.progress = F)

Error in if (display.progress) { : argument is not interpretable as logical In addition: Warning message: In if (display.progress) { :the condition has length > 1 and only the first element will be used

[ATpoint]

Please use the format bar to indicate code.

Answer 1

[vinvan]

Does setting display.progress = FALSE instead of display.progress = F help? Looks like you might have defined F already before this...

[Bios]

Thank you! It worked with display.progress = FALSE

[Devon Ryan]

Hello Biostars,

Don't forget to follow up on your threads.

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work.

Please do the same for your previous posts as well.