Question

Structure file to VCF file format

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6.1 years ago

hilikalif ▴ 10

Hi, There is a tool to convert from structure file to VCF file format? Or there is another format to use in Beagle 5? Thanks!

structure vcf population-genetics • 2.4k views

ADD COMMENT • link updated 6.1 years ago by guillaume.rbt ★ 1.0k • written 6.1 years ago by hilikalif ▴ 10

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What is "structure format"?

ADD REPLY • link 6.1 years ago by finswimmer 16k

score 0 · Answer 1 · 2018-11-06

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6.1 years ago

guillaume.rbt ★ 1.0k

Hi, You can use the software PGDspider to convert between format, I know it works from VCF to structure so it should work the other way.

ADD COMMENT • link 6.1 years ago by guillaume.rbt ★ 1.0k

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It didn't work for me. Do you know a way to use plink to make the conversion?

ADD REPLY • link 6.1 years ago by hilikalif ▴ 10

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what error message do you get when you try to do the conversion?

ADD REPLY • link 6.1 years ago by guillaume.rbt ★ 1.0k