Question

3' UTR FASTA back to genes

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6.1 years ago

underasail • 0

I currently have a fasta file of three prime UTRs, and I need to convert it to a fasta file of protein sequences for the associated genes. Is there a tool that can help with this?

genome gene • 1.4k views

ADD COMMENT • link updated 6.1 years ago by Nicolas Rosewick 11k • written 6.1 years ago by underasail • 0

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Is there any reason why the 3' UTRs are fully unassociated with any gene?

ADD REPLY • link 6.1 years ago by cmdcolin ★ 4.0k

score 1 · Answer 1 · 2018-11-06

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6.1 years ago

Nicolas Rosewick 11k

Blast the 3'UTR on ENSEMBL website. Then take the gene id found and extract the protein sequence in ENSEMBL biomart.

ADD COMMENT • link 6.1 years ago by Nicolas Rosewick 11k

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The species I'm working with isn't in ENSEMBL, but I could probably do the same thing through NCBI.

ADD REPLY • link 6.1 years ago by underasail • 0