How to convert Jaspar motif to input into homer?

Question

[a.rex]

I want to use Homer to scan for a particular motif in my genome of interest (under ATAC peaks). This motif is found in Jaspar - how can I convert it to a format suitable for Homer?

[ATpoint]

So you want to see if a certain motif is enriched in your peaks or you want to check and get position of a certain motif in the peaks? The latter is a job for fimo from the MEME suite.

[2050814297]

Hi, did you finally solve this problem? I met this too.

Answer 1

[carinapaola20]

I have used the R package universalmotif