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5.8 years ago
a.rex
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350
I want to use Homer to scan for a particular motif in my genome of interest (under ATAC peaks). This motif is found in Jaspar - how can I convert it to a format suitable for Homer?
So you want to see if a certain motif is enriched in your peaks or you want to check and get position of a certain motif in the peaks? The latter is a job for
fimo
from the MEME suite.Hi, did you finally solve this problem? I met this too.