tblastn multiple protein against db

Question

[filippodellanno39]

Hi, i would like to know which command should i type in order to blast a fasta file containing several proteins against my db containing a nucleotide genome sequence. Thanks very much

[Sej Modha]

You can find out more about different BLAST searches on The BLAST Sequence Analysis Tool page.

Answer 1

[maxime.policarpo]

You can directly blast with your file containing multiple proteins as query :

tblastn -query multiple_fasta_file.fasta -db genome