Question

novel miRNA identification from sequence

0

Entering edit mode

6.0 years ago

JulianC ▴ 30

Hi everyone!

I'm looking for a tool that can allow me to predict novel miRNA from their sequences. I tried Mireap but I'm not able to provide the "map.txt" file since I have only the bam and sam from my alignment with Bowtie2. Thanks!!

miRNA • 1.7k views

ADD COMMENT • link updated 2.4 years ago by khq5801 ▴ 10 • written 6.0 years ago by JulianC ▴ 30

0

Entering edit mode

can u tell me how did you do ? I have the same quesition

ADD REPLY • link 4.2 years ago by zhuanzhuanlee • 0

score 0 · Answer 1 · 2018-11-21

0

Entering edit mode

6.0 years ago

brettgao2018 ▴ 150

Check out the novel miRNA prediction module in sRNABench:

http://bioinfo2.ugr.es:8080/ceUGR/srnabench/

ADD COMMENT • link 6.0 years ago by brettgao2018 ▴ 150

score 0 · Answer 2 · 2019-01-25

0

Entering edit mode

5.8 years ago

Emilio Marmol ▴ 180

You could try a pipeline we recently developed in our team. Paper is still not published though.

https://github.com/emarmolsanchez/eMIRNA

ADD COMMENT • link 5.8 years ago by Emilio Marmol ▴ 180

score 0 · Answer 3 · 2022-07-06

0

Entering edit mode

2.4 years ago

khq5801 ▴ 10

Use UEA sRNA workbench - miRCAT

ADD COMMENT • link 2.4 years ago by khq5801 ▴ 10