Looking for degenerate primer sequences in a multi-fasta file

Question

[Ming]

Hello there,

Is there a certain software / script that you can recommend for looking for degenerate sequences in multi-fasta file?

I know that primer-blast is one of them, but am just exploring other options.

Thank You.

Answer 1

[Cupton]

our tools: Sequence searcher https://4virology.net/virology-ca-tools/sequence-searcher/

Base-By-Base https://4virology.net/virology-ca-tools/base-by-base/

could work, depends how many fasta seqs you have

[Ming]

Thank you! :) Much appreciated!