Entering edit mode
6.0 years ago
ishenweiyan
▴
10
I got the gene name and species, how can I retrieve all its transcript and CDS by the gene_id in python?
For example I get the gene symbol of TP53 (Gene ID: 7157)，and I want to retrieve all its transcript and CDS sequences. How could I do it? Thank you very much.
from Bio import Entrez
Entrez.email = 'A.N.Other@example.com'
handle = Entrez.efetch(db="nucleotide", id=Accession_number, rettype="fasta", retmode="text")
record = handle.read()
Could you develop what you want please
Is this what you are looking for ?
"asscess"
=="Accession" ?Yes, it should be Accession Number. Thanks for your kindly reminder.
You can take a look here