Question

load/parse cwl using Java

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6.0 years ago

pr80ik ▴ 20

I would like to parse CWL file into java model classes. I'm using cwl-avro project (cwlavro version: 2.0.4.2) as the model classes. How can I parse the cwl file so that I get back an instance of _io.cwl.avro.Workflow.Workflow_ class

cwl • 1.5k views

ADD COMMENT • link updated 5.9 years ago by denis.yuen ▴ 100 • written 6.0 years ago by pr80ik ▴ 20

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Probably best to make an issue at https://github.com/common-workflow-language/cwlavro/issues/new and tag https://github.com/denis-yuen to request his assistance

ADD REPLY • link 6.0 years ago by Michael R. Crusoe ★ 1.9k

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reported as github issue

ADD REPLY • link 6.0 years ago by pr80ik ▴ 20

score 0 · Answer 1 · 2019-01-02

FYI, https://github.com/common-workflow-language/cwlavro/issues/16#issuecomment-450888290

Note, be alert as to which version of the cwlavro you're using, I've been a bit messy with version numbers. 2.0.4 (what we currently use) let's you switch between cwltool (installed locally on the system) and bunny for cwl -> json processing (but is mostly tested with cwltool) 2.0.7 (experimental) let's you use cwltool within heterodon (doesn't require Python dependencies directly)

Can probably discuss more what that means on GitHub.