Seurat Integrated Analysis (RunMultiCCA)

Question

[Bios]

Does anyone know how I should fix the error of unused arguments? I added add.cell.id because there are duplicate cell names, but now it says unused arguments and I'm unsure how to fix this. Here's my code below:

multiCCA_list<- list(WT_S, WT_H, KO_S, KO_H)

asthma.combined4Datasets <- RunMultiCCA(object.list = multiCCA_list, genes.use = genes.use, num.cc = 30, add.cell.id1 = "WT_S", add.cell.id2 = "WT_H", add.cell.id3 = "KO_S", add.cell.id4 = "KO_H")

The error in RunMultiCCA says:

unused arguments (add.cell.id1 = "WT_S", add.cell.id2 = "WT_H", add.cell.id3 = "KO_S", add.cell.id4 = "KO_H")

Answer 1

[Santosh Anand]

RunMultiCCA doesn't take those arguments that you are trying to pass

RunMultiCCA(object.list, genes.use, add.cell.ids = NULL, niter = 25, num.ccs = 1, standardize = TRUE)

Instead you may use add.cell.ids which takes a vector

add.cell.ids    Vector of strings to pass to RenameCells to give unique cell names