How to download the .dat file of the UniProt Metazoa?
1
1
Entering edit mode
6.0 years ago
Seq225 ▴ 110

Hi,

I need the .dat file for the UniProt Metazoa. .dat has the EMBL format, which I need. But I don't see it here: https://www.uniprot.org/taxonomy/33208#

I can download the clade specific .dat files from here: https://www.uniprot.org/downloads. But I don't see the metazoan .dat file here.

Cab anybody help?

Cheers!!

gene genome alignment Assembly sequence • 2.0k views
ADD COMMENT
0
Entering edit mode

The UniProt flat file format is not the same as the EMBL format even if it is quite close. So you might run into issues if your software expects real EMBL.

ADD REPLY
0
Entering edit mode

Thank you very much.

ADD REPLY
3
Entering edit mode
6.0 years ago
vkkodali_ncbi ★ 3.8k

Go to this page: https://www.uniprot.org/uniprot/?query=reviewed:yes%20taxonomy:33208 and click on the Download button. If you choose Text from the drop-down list for Format, you will get the data in EMBL format.

ADD COMMENT
0
Entering edit mode

Thanks. That is what I did and it worked!

ADD REPLY
0
Entering edit mode

Would you please answer my another question (if you know the answer) here? Protist in UniProt/NCBI taxonomic tree

Thanks!

ADD REPLY
0
Entering edit mode

Don't forget to follow up on your threads.

Seq225 : If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work.
Upvote|Bookmark|Accept

Please do the same for your previous posts as well.

ADD REPLY
0
Entering edit mode

Thank you very much. Done!

ADD REPLY

Login before adding your answer.

Traffic: 1837 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6