JBrowse Error : HTTP 200 when fetching file

Question

[aniket.bhagat]

I'am trying to open index.html from JBrowse after running ./setup.sh. I have just loaded sample_data of volvox. But some of the tracks are not loading file. Showing "Error : HTTP 200 when fetching file"

Please help me in this Thank You.!

Screenshot : https://photos.app.goo.gl/NQsa5SJC5w7APfHk8

[GenoMax]

Tagging: cmdcolin

Answer 1

[colindaven]

The setup data should work, however, it looks like you are trying to run it on your local client machine using the file:/// protocol in the browser?

If that is true, try using the JBrowse-1.16.1-desktop-linux-x64.zip from the following site, it is likely more appropriate to your needs.

http://jbrowse.org/blog/

I use JBrowse on a server only, but the local version is attractive for some colleagues.

[cmdcolin]

+1 for this. You need to setup a web server, you cannot just double click index.html in your file explorer and have it work even if it appears to work for some very limited cases http://jbrowse.org/docs/faq.html#what-webserver-is-needed-for-jbrowse

And indeed, the desktop version is a good option also

Answer 2

[rajesh]

First run perl bin/flatfile-to-json.pl programme with features and then run run generatename.pl. program Only after this results are displayed.

Answer 3

[aniket.bhagat]

Thank you everyone..

Actually i wanted to implement browse in Flask framework, and by just adding "JBrowse" folder in static directory of my app solved this problem.

Thanks again for your valuable responses.