Do some cancer type data in RTCGA cannot be downloaded?

Question

[sxs870917]

When I try to download some mRNA data from RTCGA, for example, ACC or ESCC, LIHC, t R reported:

Error in expressionsTCGA(ACC.mRNA, extract.cols = c("GATA3", "PTEN", "XBP1", : object 'ACC.mRNA' not found.

So, is it my coding problem or the package is not working at the moment?

Many thanks.

Answer 1

[aditi.qamra]

Seems like ACC.mRNA is not included in the RTCGA.mRNA package. You can use Xena browser (https://xenabrowser.net/) or http://firebrowse.org/ to download gene expression for ACC.