Multiple sequence alignment tools for bigdata genomics ?

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5.9 years ago

sunnykevin97 ▴ 990

HI I'm looking for alignment tools which do multiple genome alignments and can able to handle big size WGS data ?

I had a job to do, In one go I'd like to align ~18 WGS datsets ?

If their any tools, can it generates MSA alignment in PHYLIP format or other format ?

suggestions please...

genome alignment • 1.1k views

ADD COMMENT • link 5.9 years ago by sunnykevin97 ▴ 990

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You should at least provide information about what the genome size is (and what format the data is in, e.g. finished chromosomes/contigs/pieces of DNA) when asking a "shrouded in mystery" question.

ADD REPLY • link 5.9 years ago by GenoMax 147k

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thanks, genome size ~ 8 GB each mostly all are draft genomes.

ADD REPLY • link 5.9 years ago by sunnykevin97 ▴ 990

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As I mentioned in your other thread, I'm pretty confident that no such tools exist. At least, none that will generate a single contiguous alignment like you need.

ADD REPLY • link 5.9 years ago by Joe 21k

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