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5.9 years ago
athira112athira
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10
Hi, I am working with metagenomic data. I need a tool called reago for selecting rRNA from my metagenomic data. The source file downloaded from GitHub using bioconda channel(https://github.com/chengyuan/reago-1.1), but I get the following error during installation.
UnsatisfiableError: The following specifications were found to be in conflict:
- reago
- secretstorage
Use "conda info <package>" to see the dependencies for each package.
can anyone suggest a possible solution for this?
Did you try the error message suggestion? Did you try
conda info reago? What is its output?Conda was experiencing disruptions due to internal updates yesterday, these should have been sorted out already. If you are lucky, the error you experienced was due to these updates, and if you try now it will work.
Alternatively, you may have set up incorrectly your channels. What is the output of
conda config --show channels?Also check if the tool you aim to install is
python2(or 3) and your conda environment is not matching. In this case you'll need to create a new conda environment with the appropriate python version.Thank you for the replay ,
I am using python 3.6.6 in linux os 14.04, conda 4.5.12
Thank you for the replay,
This is the output of conda info reago
reago 1.1 py27_1
file name : reago-1.1-py27_1.tar.bz2 name : reago version : 1.1 build string: py27_1 build number: 1 channel : https://conda.anaconda.org/bioconda/linux-64 size : 226 KB arch : x86_64 constrains : () md5 : 14a4fe98f3d61bfe36db16fa1d302555 platform : linux subdir : linux-64 url : https://conda.anaconda.org/bioconda/linux-64/reago-1.1-py27_1.tar.bz2 dependencies: genometools-genometools infernal ==1.1.1 networkx python 2.7*
reago 1.1 py27_0
file name : reago-1.1-py27_0.tar.bz2 name : reago version : 1.1 build string: py27_0 build number: 0 channel : https://conda.anaconda.org/bioconda/linux-64 size : 12 KB arch : x86_64 constrains : () license : MIT md5 : 178888145353b0cd6ae66e0fb4413a33 platform : linux subdir : linux-64 url : https://conda.anaconda.org/bioconda/linux-64/reago-1.1-py27_0.tar.bz2 dependencies: networkx python 2.7*
This is the output for conda config --show channels
channels: - conda-forge - bioconda - defaults
I also try to install a tool called csmiller/EMIRGE from Github (https://github.com/csmiller/EMIRGE.git) it also shows the same error during installation.