How much sequencing depth is required to detect a rare group of organism in environmental sample?
0
0
Entering edit mode
5.8 years ago
Ming ▴ 110

Hello there,

I am trying to look for a rare group of organism that is low in relative abundance in my sediment samples. I have already sequenced in on dual lanes of HiSeq 2500. What are some criteria to use to see if my sequencing depth is sufficient for this group of organisms?

Thank You.

sequencing • 474 views
ADD COMMENT

Login before adding your answer.

Traffic: 1940 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6