What does cluster number in ClusterMaker represent?
1
1
Entering edit mode
5.8 years ago
Arindam Ghosh ▴ 530

While clustering a network using Community Cluster (GLay) in ClusterMaker it gives a cluster number for each cluster. What does this represent? I Initially thought it to simple numbers to distinguish between two clusters but I saw that the cluster with highest node is at #2 while the other major cluster with slightly less nodes is #1. This makes me raise the question.

Parallel post in Cytoscape Google Forums

cytoscape clustering clustermaker network • 1.6k views
ADD COMMENT
1
Entering edit mode
5.8 years ago
scooter ▴ 620

In general, the cluster numbers are roughly ordered from largest cluster to smallest cluster, but each algorithm might treat these somewhat differently. Not sure why GLay isn't just ordering the clusters like other algorithms (e.g. MCL) do.

ADD COMMENT
0
Entering edit mode

That's my concern. Even in their example problem in their paper I saw a similar situation.

ADD REPLY

Login before adding your answer.

Traffic: 1676 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6