Annotating multiple sequence alignment

Question

[tim.ivanov.92]

Does anyone know know how to use TEXshade package? Specifically, i want to just highlight some specific regions inside my alignment (exons)

Answer 1

[Asaf]

I wrote something that does it with RTF eight years ago: https://github.com/asafpr/highlightMSA No idea if it still works but you might get some useful code from it

[tim.ivanov.92]

Thank you, this is helpful! Would you mind giving me an example of usage please?

[Asaf]

Sorry, it was so long ago that I can't remember if and where I used it

[tim.ivanov.92]

ok, thank you anyway!