TCGA RNAseq Data is normalized against which Genome version

Question

[rajesh]

Hi everyone I just have a simple question. I have downloaded the TCGA RNAseq data for PAAD, I have done with differential gene expression analysis. Now i required the gene coordinate for the differential expressed genes. now my question is against which Human genome version it is harmonized/mapped. Is it hg38 or hg19. How to get gene coordinate from gene name only.

Thanks in advance

Answer 1

[GenoMax]

You could have found this information by an easy search. It is GRCh38, if you downloaded the data directly from TCGA-GDC.

[rajesh]

Yeah, I have downloaded the RNAseq data from GDC-TCGA portal.

[Ram]

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work.