Entering edit mode
5.9 years ago
Igor Lalin
•
0
I discovered something interesting and it could be a fact that has been known for some time regarding Konnector:
When running the following command after qlogin:
konnector -j 40 -k 96 -o kon96 out_reads_1.fastq out_reads_2.fastq
Konnector produces: kon96_reads1.fq, kon96_reads2.fq and kon96_pseudoreads.fa
If running konnector as a shell script it will not produce kon96_pseudoreads.fa but kon96_merged.fa.
This is an important difference because Konnector reads can be fed into Abyss-pe for finishing the genome assembly.
Contact the team at BCGSC directly: https://github.com/bcgsc Their members are infrequent users here.
or open an issue on the abyss github page
Hi Igor Lalin ,
I also edited you post title category, (from Tool to Question) as this is not really a tool announcement (for which we reserve that specific tag) but rather a question about a tool.