EdgeR differential expression and heatmap
0
0
Entering edit mode
5.8 years ago
Kasthuri ▴ 300

I performed a differential gene expression analysis for the red vs. blue group as shown in this image below (RNA-seq data) using TCGAbiolinks which uses the EdgeR package. Clearly, there is a difference between the groups however the difference is due to under-expression in some samples in the blue group than overall difference uniformly across the groups. How do we generate a heatmap that shows differential expression for situations like these? I could average each group for each gene separately and plot, but is that legitimate? Thanks.

Here is the link, if it is not properly hyperlinked: DGE

RNA-Seq • 1.8k views
ADD COMMENT
1
Entering edit mode

Please see How to add images to a Biostars post, I did it for you this time.

ADD REPLY
0
Entering edit mode

Thanks, I figured out.

ADD REPLY

Login before adding your answer.

Traffic: 2494 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6