Chip seq (ac) reads count per pick
0
1
Entering edit mode
5.8 years ago
Bnf83 ▴ 150

Hi guys I have to analyze chip seq acetylation data. I'm a newbie in the field. I followed the typical pipeline proposed in many tutorials, i.e. starting from the alignment until the Macs peak calling. Now I have .merged.bed files that contain the merged picks (this was done using mergeBed). Now my question is how to obtain the count of reads on the merged picks in order to use that matrix as input of edgeR?

Thank you in advance

B.

ChIP-Seq • 1.0k views
ADD COMMENT
1
Entering edit mode
ADD REPLY

Login before adding your answer.

Traffic: 2995 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6