Question

Is there a BlastKOALA local installation?

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5.8 years ago

112498262 ▴ 10

I would like to carry out a whole genome KO annotation of a bacterial genome using BlastKOALA but as far as I can find it is only available as a web service. Is it possible to install BlastKOALA locally or is there an alternative tool that assigns KO numbers?

Thanks in advance.

genome gene • 4.0k views

ADD COMMENT • link updated 4.1 years ago by Biostar 20 • written 5.8 years ago by 112498262 ▴ 10

score 1 · Answer 1 · 2019-02-11

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5.8 years ago

anicet.ebou ▴ 170

I don't know a way to have BlastKOALA installed locally. But I know another way to have KO annotation: KAAS automatic server here. And KAAS have a standalone version for Linux and Mac OS available at here.

ADD COMMENT • link 5.8 years ago by anicet.ebou ▴ 170

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The structure and availability of data on the Sanger ftp site has changed so KAAS SA doesn't configure correctly.

ADD REPLY • link 5.8 years ago by 112498262 ▴ 10

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Ok I forward you a software recommendation but I didn't use it by myself: MEGAN6, Microbiome analysis using a single application. http://ab.inf.uni-tuebingen.de/software/megan6/. Hope It will help you.

ADD REPLY • link 5.8 years ago by anicet.ebou ▴ 170

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Thank you so much :)

ADD REPLY • link 5.8 years ago by 112498262 ▴ 10