Question

Identification of Long Non coding RNa in De novo

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5.7 years ago

AyehSadr • 0

Dear All

I am working on Identification of long non-coding RNAs in scorpion, in this case the genome reference is not available, I have to do blast for to all transcript candidates and I don't find the closest genome. I would appreciate to guide me about the best the best approach.

Best Regards Ayeh

rna-seq • 1.3k views

ADD COMMENT • link updated 5.7 years ago by Biostar 20 • written 5.7 years ago by AyehSadr • 0

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Which type of data do you have ? RNA-Seq ?

ADD REPLY • link 5.7 years ago by Nicolas Rosewick 11k

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Yes, 150 PE and transcriptome assembly process by means of Trinity

ADD REPLY • link 5.7 years ago by AyehSadr • 0

score 1 · Answer 1 · 2019-02-11

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5.7 years ago

Nicolas Rosewick 11k

Could you edit your question with these informations. You could try trinotate : https://github.com/Trinotate/Trinotate.github.io/wiki

ADD COMMENT • link 5.7 years ago by Nicolas Rosewick 11k