ATAC-seq transcription factor binding prediction

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6.0 years ago

Lucy ▴ 150

Hi,

I am trying to predict transcription factor binding sites from ATAC-seq data, for which I also have matched RNA-seq. I have read a lot of papers recently suggesting different methods for doing this (all of which claim that they are better than the other techniques). I was wondering whether anyone had experience with these different methods, and whether they would recommend any?

I am very confused by all of the available options so would appreciate some guidance!

Thanks,

Lucy

ATAC-seq RNA-seq transcription factor • 1.5k views

ADD COMMENT • link updated 5.8 years ago by am2622 • 0 • written 6.0 years ago by Lucy ▴ 150

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Hi Lucy I am going through the same process, have you found a good software to start with?

Thanks,

Anyi

ADD REPLY • link 5.8 years ago by am2622 • 0

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I still haven't worked out the best way to do this. Have you had any luck?

ADD REPLY • link 5.1 years ago by Lucy ▴ 150

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