Question

dbsnp for capra hircus

0

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5.9 years ago

Mbillah ▴ 140

Can anyone suggest me a dbsnp for Capra hircus(goat)? Recently I find out variants of a goat breed now I want to add rs id to this SNPs so I need dbsnp.

snp indels variants • 1.3k views

ADD COMMENT • link 5.9 years ago by Mbillah ▴ 140

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dbSNP contains only human variation. No goat variation is available from it.

ADD REPLY • link 5.9 years ago by ATpoint 86k

score 2 · Answer 1 · 2019-02-14

ATpoint is quite right, dbSNP (relatively) recently changed to host only human data. Goat variation/phenotype data is now hosted at the European variant archive (EVA) and also OMIA.

If you want to annotate your variants you can use the variant effect predictor with your VCF file, Ensembl has the variations from EVA/OMIA so you can match these up with your variants this way.