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5.8 years ago
nbe
•
0
I'm quite new to R so I installed the qqman package and everything and it says that the command to generate a Manhattan plot is the following:
manhattan(gwasResults, chr="CHR", bp="BP", snp="SNP", p="P" )
How can I replace their default data (gwasResults) with my own file and what type of file does it take? Is it an association file generated from PLINK?
Thanks!
It is written in the first page of the manual: they are "Simulated GWAS results as obtained from plink --assoc." You can find the manual here