Change NBCI accession numbers to UNIPROT identifiers

Question

[Darrill]

Hi everyone, I have a list of NCBI Accession numbers such as:

YP_009332565.1
YP_009326565.1
YP_002354191.1
NP_028703.1
etc

And because mmseq taxonomy only deal with Uniprot id I need to convert them into Uniprot ids.

Does anyone have an idea or a tools to do such a work? Thank you for your help.

[Darrill]

I see I see thank you. But I'm looking for a program to run in terminal to include it on my pipeline directly...

[vkkodali_ncbi]

For programmatic mapping of IDs, you can use UniProt's REST API as described here: https://www.uniprot.org/help/api_idmapping

[Darrill]

Thanks a lot it was what I was looking for.

Answer 1

[Benn]

You can use the uniprot website:

https://www.uniprot.org/uploadlists/

Use as input "RefSeq Protein" and as output "UniProtKB"

From your query only two are correct though...