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5.8 years ago
jaqx008
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110
Hello All. I just made a DESeq2 analysis and generated a scatter plot. I am trying to see difference in expression of reads coming from same loci between my treated and untreated samples. I have no idea how to fetch the Log2 fold change table. I am only able to export the cts file which I think is the same as the count table I used for the analysis. I am in R-studio, How do I get the Log2fold change and also How do I interpret my scatterplot (attached) please? Thanks
RNA-seq workflow: gene-level exploratory analysis and differential expression
I was able to obtain the foldchange information. Thanks alot :). And I think I understand whats going on in the plot now after carefully looking at the axis and comparing it to the foldchange data. Thanks again
How to add images to a Biostars post
Thanks. I added the image link above
To add your picture full page :
img src="https://i.ibb.co/y05Sqr9/Screen-Shot-2019-02-18-at-3-46-09-PM.png"/>add
<before imgThanks. It is clear to me now whats going on in the scatter plot