paired reads have different names

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5.8 years ago

mm ▴ 20

Hi, I have a problem while running BWA mem on paired end fastq file downloaded from ebi. When I ran BWA-mem it gives an error: [mem_sam_pe] paired reads have different names: "ERR313206.38137432", "ERR313206.38137447"

[mem_sam_pe] paired reads have different names: "ERR313206.38137437", "ERR313206.38137452"

[mem_sam_pe] paired reads have different names: "ERR313206.38137431", "ERR313206.38137446"

[mem_sam_pe] paired reads have different names: "ERR313206.38137434", "ERR313206.38137449"

[mem_sam_pe] paired reads have different names: "ERR313206.38137433", "ERR313206.38137448"

[mem_sam_pe] paired reads have different names: "ERR313206.38137438", "ERR313206.38137453"

[mem_sam_pe] paired reads have different names: "ERR313206.38137436", "ERR313206.38137451"

[mem_sam_pe] paired reads have different names: "ERR313206.38137435", "ERR313206.38137450"

If anyone had this issue in the past and know how to solve ... please let me know.

Thanks.

next-gen • 1.6k views

ADD COMMENT • link 5.8 years ago by mm ▴ 20

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How did you download the data and how was alignment done? Show all involved code please. Also please use the formatting bar (101010) to highlight code, messages and data examples.