Genome annotation to KEGG KO ids

Question

[Dattatray Mongad]

I have a complete genome sequence of an organism well annotated. I want to get KO ids for eanch ezymes found in the genome.

And what if I have partially annotated sequence?

Any ideas are welcomed.

Answer 1

[SilentGene]

As an alternative solution, you can annotate your genome using Prokka, and then use this script to convert the result from Prokka to the KEGG annotation. You can do this on your local laptop efficiently instead of uploading your genomes to other web servers such as blastkoala.

[lieven.sterck]

Valid answer but only applicable for prokaryotes of course (but since OP did not specify it could work indeed )

Answer 2

[lieven.sterck]

Have you tried looking at the KEGG webpages?

Doing so you will stumble onto this: blastkoala , give that a try.