Automated tool for downloading Autism data from GEO on Humans

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5.7 years ago

naseerkhan861 ▴ 10

Is there some tool using which I can download all the Gene Expression data(Subjects and Controls) from GEO(Gene Expression Omnibus). For example I want to do following which is manual and exhausting process.

I typed the word "Autism" in GEO browser and it resulted in about 4000 results so I need to download Gene Expression data specific to humans and human tissues from these results so that I could use that data for further analysis?

Please tell me what is the tool that I can use here?

Autism GEO Programming • 942 views

ADD COMMENT • link 5.7 years ago by naseerkhan861 ▴ 10

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I am not sure what exactly you want to do with these datasets but if you could use pre-analyzed data then look at EBI-Expression Atlas for human data. You could look at both baseline gene expression and differential in autism.

ADD REPLY • link 5.7 years ago by GenoMax 147k

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Thanks very much for your reply. Obviously I myself know what I gonna do to that datasets afterwards I mean things like GSEA and Integration with PPI etc these are few things so the list is long . Are there other sources besides GEO where I can get Autism Gene expression Microarray and RNA datasets?

ADD REPLY • link 5.7 years ago by naseerkhan861 ▴ 10

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