What dose this error of hisat2 mean? - (ERR): hisat2-align died with signal 11 (SEGV)
0
1
Entering edit mode
5.7 years ago
taoi2 ▴ 40

Dear hisat2 users

I have used STAR, but am a New user of hisat2. I installed hisat2 latest version via bioconda.

After downloading genome.fa from GENCODE, I made genome iindex without any error. Next, I conducted the following command for pair-end reads mapping:

$ hisat2 -x /Volumes/path-to/GRCm38.p6.genome.index -1 /Volumes/path-to/R_1.fastq -2 /Volumes/path-to/R_2.fastq -p 4 -S /Volumes/path-to/R.sam

But error message was returned:

(ERR): hisat2-align died with signal 11 (SEGV)

Please tell me what this message means, and also any reference sites.

Sincerely,

rna-seq HISAT2 mapping • 4.3k views
ADD COMMENT
1
Entering edit mode
ADD REPLY

Login before adding your answer.

Traffic: 1329 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6