how to perform interaction and binding site between lncRNA and mRNA?

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5.7 years ago

abu_alezz • 0

I have null hypotheses that lncRNA and mRNA have a correlation according to many articles and I couldn't find any database for lncRNA and mRNA to know which site they are binding... anyone can help me, please

gene genome • 1.1k views

ADD COMMENT • link updated 5.7 years ago by h.mon 35k • written 5.7 years ago by abu_alezz • 0

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How about this? - LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse (http://123.59.132.21/lncrna2target/)

ADD REPLY • link 5.7 years ago by Kevin Blighe 88k

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There is a correlation at gene expression levels/transcription between mRNA and it's putative lncRNA but other than that, there are several mechanisms about lncRNA function. I did not understand "binding" part. Do you mean the lncRNA binding to it's target mRNA ?

ADD REPLY • link 5.7 years ago by GouthamAtla 12k

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thank you for replying me sir, I found so many interaction databases about micRNA and their binding with other genes same as miRanda, TargetScan and PicTar. so what I want, it's about lncRNA targeting mRNA to indicate the binding site between in these two genes(lncRNA and mRNA) THANK YOU

ADD REPLY • link 5.7 years ago by abu_alezz • 0

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