How to generate partition file for raxmlHPC analysis?

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5.7 years ago

Kumar ▴ 120

I need to conduct evolutionary analysis by raxmlHPC, wherein I have to to follow the model as given below, partition model-maximum likelihood phylogeny by GTR GAMMA model of substitution with 100 nonparametric bootstrap.

I have phylip alignment file generated by CLUSTALW, which consist 31 bacterial strains (each strain consist of 29 concatenated gene sequences). Therefore, please let me know how to create partitioned file?

raxML alignment evolution • 3.2k views

ADD COMMENT • link updated 5.7 years ago by Sishuo Wang ▴ 230 • written 5.7 years ago by Kumar ▴ 120

1

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Hi,

The following three could be helpful.

catsequences

supermat

SuperCRUNCH

ADD REPLY • link 5.7 years ago by Sishuo Wang ▴ 230

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Thank you Sishuo Wang.

ADD REPLY • link 5.7 years ago by Kumar ▴ 120

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