Question

Variant allele frequency

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5.7 years ago

sruthi ▴ 40

Can we adjust variant allele frequency in any of the tools like VarScan2, Mutect etc..

next-gen sequencing • 1.6k views

ADD COMMENT • link updated 5.7 years ago by nsmi8446 ▴ 170 • written 5.7 years ago by sruthi ▴ 40

score 2 · Answer 1 · 2019-03-28

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5.7 years ago

nsmi8446 ▴ 170

Once you have your variant file you can filter variants based on allele frequency:

See the section on allele filtering. Hope this helps.

ADD COMMENT • link 5.7 years ago by nsmi8446 ▴ 170

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Thank you @nsmi8446. I will check with it.

ADD REPLY • link 5.7 years ago by sruthi ▴ 40

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Hey! Thanks. It worked.

ADD REPLY • link 5.7 years ago by sruthi ▴ 40