Question

table to convert RS names to CHR-POS-REF-ALT (es GnomAD)

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5.7 years ago

cocchi.e89 ▴ 290

Dear all,

is there a table to convert (SNV and INDELs) rs names into CHR-POS-REF-ALT format?

Thanks a lot in advance for any help!

rs variant names nomeclature gnomad • 4.2k views

ADD COMMENT • link 5.7 years ago by cocchi.e89 ▴ 290

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What exact input data do you have, currently? - just a vector or list (in a file) of rs IDs?

ADD REPLY • link 5.7 years ago by Kevin Blighe 88k

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Thanks for reply. Just several rsIDs (I can create a file or a list if matters)

ADD REPLY • link 5.7 years ago by cocchi.e89 ▴ 290

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Please take a look at the answer by ATpoint. where at least 2 solutions can be found.

ADD REPLY • link 5.7 years ago by Kevin Blighe 88k

score 1 · Answer 1 · 2019-03-29

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5.7 years ago

ATpoint 86k

This has been asked before, please see:

ADD COMMENT • link 5.7 years ago by ATpoint 86k