Pulling proteins from the EML PRIDE proteomes
0
0
Entering edit mode
5.6 years ago
underasail • 0

I am currently trying to search through proteomes to see if specific proteins are present. I am, however, a little confused by what is available in the EMBL-EBI PRIDE database. There appears to be much more information than I need at the moment.

Is there a way to condense the available information for PRIDE entries down to a fasta file, or something similar, of the protein sequences found in the proteome?

EDIT: I should mention that I am trying to search for my protein of interest by sequence as it would be from an organism different from the one that the PRIDE data was collected in (ie: its food).

PRIDE EMBL proteome • 697 views
ADD COMMENT

Login before adding your answer.

Traffic: 1625 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6