Question

IPA - gene list

1

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5.7 years ago

user56 ▴ 20

Hi,

I did analysis in IPA (Ingenuity Pathway Analysis) on RNA-Seq data. I have my pathways but I would like to know what genes are present in particular Canonical Pathway. The ratio says for example 8/240 (8 genes from my dataset, 240 genes for the whole pathway). I am interested in these 240 genes. Where can I find them?

ipa gene list canonical pathway RNA-Seq • 3.7k views

ADD COMMENT • link updated 3.5 years ago by GenoMax 148k • written 5.7 years ago by user56 ▴ 20

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Is there a way to export just the genes from our dataset? I do not want all the genes from the pathway, rather just the genes that are part of my dataset which are involved in the pathway.

ADD REPLY • link 3.5 years ago by shreya.kouda • 0

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That information is generally shown in tables etc. Number of genes from your list that are present in the pathway.

ADD REPLY • link 3.5 years ago by GenoMax 148k

score 2 · Answer 1 · 2019-04-12

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5.7 years ago

Arup Ghosh 3.2k

Export the pathway data to get the list of genes belonging to a particular pathway form your gene list. To get all the genes related to a pathway just search the pathway name in the top search bar and you will get the complete list.

ADD COMMENT • link 5.7 years ago by Arup Ghosh 3.2k

score 1 · Answer 2 · 2019-04-12

From Summary table of results --> Top Canonical Pathways --> Select Pathway you are interested in --> A new window opens --> Find Open Pathway button to the right under the bar graph --> Pathway opens in a new window --> Under Export (top row of icons) find second button for Export Data --> Select All Molecules (default) --> Save Tab delimited text file by providing a name.