Entering edit mode
5.7 years ago
misterie
▴
110
Hi,
Could you explain me how VCFtools calculate Tajima'S D within 100-kb nonoverlapping window?
I found general equation
but it is too general. I need equation that can I apply directly to VCF file. Thank you in advance.
implementation : https://github.com/vcftools/vcftools/blob/f7aee6d26885064d834199052573e31338240b76/src/cpp/variant_file_output.cpp#L3940