is there exist GATK pre-processing(WGS) Script??

Question

[9521ljh]

i have so confused because of different version.

So i want to find Script of pre-processing for whole genome seqeuncing result from GATK

[Ram]

Please elaborate on these terms you use here:

• different versions (which software?)
• pre-processing
• result

Answer 1

[GenoMax]

GATK best practices documents for v.3.x
GATK best practices documents for v.4.x

GATK tutorials for v.3.x
GATK tutorials for v.4.x