Entering edit mode
5.7 years ago
yerspestis
•
0
Please tell how to point the path to prerequisites. I tried to set the environment variable, but apparently did not cope with this (or what should I do here)
==============================================================================
STATUS MAKER v2.31.10
==============================================================================
PERL Dependencies: VERIFIED
External Programs: MISSING
! RepeatMasker
! BLAST
! Exonerate
Can we assume you went through the installation docs of MAKER?
Yes, but still not clear
OK, just making sure ;-)
Which environmental variable did you set?
From instruction:
I did it this way
Is that
bash_profile
file loaded by default? For instance in my linux environment it's the.bashrc
file that is loaded (and where I have to put stuff like this)Doing it the way you describe might not ensure that the
PATH
variable is also available to MAKER.The path to your blast is correct? Can you now just type
blastp
for instance on the commandline?If you are having trouble with the installation, I haven't personally tried it, but perhaps you might give the bioconda recipe for
MAKER
a try. https://bioconda.github.io/recipes/maker/README.html