PAGA plot question
0
0
Entering edit mode
5.5 years ago
shoujun.gu ▴ 350

I am now using PAGA for trajectory inference. And after I use sc.tl.paga() to analysis my scRNASeq data, I tried to plot the cluster. And I found the result plot layout from plot function:1 ) sc.pl.paga(), and 2) sc.pl.paga_compare() are different (but in the tutorial example, they are same).

I compared to the two result plot. There is only embedding difference. I'd like to know are there anyways to make the output plots from these two function looks same (as the tutorial example shows)?

Thanks.

software error sequencing • 1.3k views
ADD COMMENT

Login before adding your answer.

Traffic: 1357 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6