Entering edit mode
5.6 years ago
O.rka
▴
740
I've downloaded the flat files from EcoCyc
and got an ecoyc.ocelot
format that I THINK contains the network structure but I'm not sure. Is there any way to extract the nodes and edges that go into the back end of EcoCyc
?
Here is one example of a network from EcoCyc
. I'm not sure where this info is in the flat files or how to extract this information from the existing files.
https://ecocyc.org/gene?orgid=ECOLI&id=HYAA-MONOMER
Essentially, I'm just trying to get a table that has edge connections such as the following:
[protein_A] [protein_B] [connection type] [weight (if this is relevant)]
Here's a list of the files that I have from EcoCyc
: