GO enrichmenet analysis of non model organism using bingo

Question

[najibveto]

hello everyone

i am doing an experiment to get the microrna expression after infection of fish (olive flounder) with a bacteria and i got the target gene of microrna by predicting them. now i want to use bingo to do gene ontology enrichment analysis using bingo.

so i want to know the file format to input for the tool and how to make a custom reference to be used by the tool?

[ishy]

I have the same problem too. BiNGO works great for model organisms with reference genomes, but is complicated for non-model organisms. Any comment of how you solved the problem of making a custom annotation file and how it worked?

Answer 1

[Jean-Karim Heriche]

Bingo is a cytoscape plugin that can accept graphs or gene lists as input. Please read the docs and/or the tutorial. See also this blog post.

Answer 2

[EagleEye]

A: GO enrichment analysis using a Text file with all the genes and GO ids associat

This might be useful